Transcriptomic Analysis Reveals Possible Influences of ABA on Secondary Metabolism of Pigments, Flavonoids and Antioxidants in Tomato Fruit during Ripening
Identifieur interne : 000392 ( Main/Exploration ); précédent : 000391; suivant : 000393Transcriptomic Analysis Reveals Possible Influences of ABA on Secondary Metabolism of Pigments, Flavonoids and Antioxidants in Tomato Fruit during Ripening
Auteurs : Wangshu Mou ; Dongdong Li ; Zisheng Luo ; Linchun Mao ; Tiejin YingSource :
- PLoS ONE [ 1932-6203 ] ; 2015.
Abstract
Abscisic acid (ABA) has been proven to be involved in the regulation of climacteric fruit ripening, but a comprehensive investigation of its influence on ripening related processes is still lacking. By applying the next generation sequencing technology, we conducted a comparative analysis of the effects of exogenous ABA and NDGA (Nordihydroguaiaretic acid, an inhibitor of ABA biosynthesis) on tomato fruit ripening. The high throughput sequencing results showed that out of the 25728 genes expressed across all three samples, 10388 were identified as significantly differently expressed genes. Exogenous ABA was found to enhance the transcription of genes involved in pigments metabolism, including carotenoids biosynthesis and chlorophyll degradation, whereas NDGA treatment inhibited these processes. The results also revealed the crucial role of ABA in flavonoids synthesis and regulation of antioxidant system. Intriguingly, we also found that an inhibition of endogenous ABA significantly enhanced the transcriptional abundance of genes involved in photosynthesis. Our results highlighted the significance of ABA in regulating tomato ripening, which provided insight into the regulatory mechanism of fruit maturation and senescence process.
Url:
DOI: 10.1371/journal.pone.0129598
PubMed: 26053166
PubMed Central: 4460000
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Transcriptomic Analysis Reveals Possible Influences of ABA on Secondary Metabolism of Pigments, Flavonoids and Antioxidants in Tomato Fruit during Ripening</title><author><name sortKey="Mou, Wangshu" sort="Mou, Wangshu" uniqKey="Mou W" first="Wangshu" last="Mou">Wangshu Mou</name><affiliation><nlm:aff id="aff001"></nlm:aff></affiliation></author><author><name sortKey="Li, Dongdong" sort="Li, Dongdong" uniqKey="Li D" first="Dongdong" last="Li">Dongdong Li</name><affiliation><nlm:aff id="aff001"></nlm:aff></affiliation></author><author><name sortKey="Luo, Zisheng" sort="Luo, Zisheng" uniqKey="Luo Z" first="Zisheng" last="Luo">Zisheng Luo</name><affiliation><nlm:aff id="aff001"></nlm:aff></affiliation></author><author><name sortKey="Mao, Linchun" sort="Mao, Linchun" uniqKey="Mao L" first="Linchun" last="Mao">Linchun Mao</name><affiliation><nlm:aff id="aff001"></nlm:aff></affiliation></author><author><name sortKey="Ying, Tiejin" sort="Ying, Tiejin" uniqKey="Ying T" first="Tiejin" last="Ying">Tiejin Ying</name><affiliation><nlm:aff id="aff001"></nlm:aff></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">26053166</idno><idno type="pmc">4460000</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4460000</idno><idno type="RBID">PMC:4460000</idno><idno type="doi">10.1371/journal.pone.0129598</idno><date when="2015">2015</date><idno type="wicri:Area/Pmc/Corpus">000153</idno><idno type="wicri:Area/Pmc/Curation">000153</idno><idno type="wicri:Area/Pmc/Checkpoint">000306</idno><idno type="wicri:Area/Ncbi/Merge">001B68</idno><idno type="wicri:Area/Ncbi/Curation">001B68</idno><idno type="wicri:Area/Ncbi/Checkpoint">001B68</idno><idno type="wicri:Area/Main/Merge">000392</idno><idno type="wicri:Area/Main/Curation">000392</idno><idno type="wicri:Area/Main/Exploration">000392</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Transcriptomic Analysis Reveals Possible Influences of ABA on Secondary Metabolism of Pigments, Flavonoids and Antioxidants in Tomato Fruit during Ripening</title><author><name sortKey="Mou, Wangshu" sort="Mou, Wangshu" uniqKey="Mou W" first="Wangshu" last="Mou">Wangshu Mou</name><affiliation><nlm:aff id="aff001"></nlm:aff></affiliation></author><author><name sortKey="Li, Dongdong" sort="Li, Dongdong" uniqKey="Li D" first="Dongdong" last="Li">Dongdong Li</name><affiliation><nlm:aff id="aff001"></nlm:aff></affiliation></author><author><name sortKey="Luo, Zisheng" sort="Luo, Zisheng" uniqKey="Luo Z" first="Zisheng" last="Luo">Zisheng Luo</name><affiliation><nlm:aff id="aff001"></nlm:aff></affiliation></author><author><name sortKey="Mao, Linchun" sort="Mao, Linchun" uniqKey="Mao L" first="Linchun" last="Mao">Linchun Mao</name><affiliation><nlm:aff id="aff001"></nlm:aff></affiliation></author><author><name sortKey="Ying, Tiejin" sort="Ying, Tiejin" uniqKey="Ying T" first="Tiejin" last="Ying">Tiejin Ying</name><affiliation><nlm:aff id="aff001"></nlm:aff></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2015">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Abscisic acid (ABA) has been proven to be involved in the regulation of climacteric fruit ripening, but a comprehensive investigation of its influence on ripening related processes is still lacking. By applying the next generation sequencing technology, we conducted a comparative analysis of the effects of exogenous ABA and NDGA (Nordihydroguaiaretic acid, an inhibitor of ABA biosynthesis) on tomato fruit ripening. The high throughput sequencing results showed that out of the 25728 genes expressed across all three samples, 10388 were identified as significantly differently expressed genes. Exogenous ABA was found to enhance the transcription of genes involved in pigments metabolism, including carotenoids biosynthesis and chlorophyll degradation, whereas NDGA treatment inhibited these processes. The results also revealed the crucial role of ABA in flavonoids synthesis and regulation of antioxidant system. Intriguingly, we also found that an inhibition of endogenous ABA significantly enhanced the transcriptional abundance of genes involved in photosynthesis. Our results highlighted the significance of ABA in regulating tomato ripening, which provided insight into the regulatory mechanism of fruit maturation and senescence process.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Rodrigo, Mj" uniqKey="Rodrigo M">MJ Rodrigo</name></author><author><name sortKey="Marcos, Jf" uniqKey="Marcos J">JF Marcos</name></author><author><name sortKey="Alferez, F" uniqKey="Alferez F">F Alferez</name></author><author><name sortKey="Mallent, Md" uniqKey="Mallent M">MD Mallent</name></author><author><name sortKey="Zacarias, L" uniqKey="Zacarias L">L Zacarias</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ren, J" uniqKey="Ren J">J Ren</name></author><author><name sortKey="Chen, P" uniqKey="Chen P">P Chen</name></author><author><name sortKey="Dai, Sj" uniqKey="Dai S">SJ Dai</name></author><author><name sortKey="Li, P" uniqKey="Li P">P Li</name></author><author><name 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uniqKey="Terrier N">N Terrier</name></author><author><name sortKey="Glissant, D" uniqKey="Glissant D">D Glissant</name></author><author><name sortKey="Grimplet, J" uniqKey="Grimplet J">J Grimplet</name></author><author><name sortKey="Barrieu, F" uniqKey="Barrieu F">F Barrieu</name></author><author><name sortKey="Abbal, P" uniqKey="Abbal P">P Abbal</name></author><author><name sortKey="Couture, C" uniqKey="Couture C">C Couture</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list></list><tree><noCountry><name sortKey="Li, Dongdong" sort="Li, Dongdong" uniqKey="Li D" first="Dongdong" last="Li">Dongdong Li</name><name sortKey="Luo, Zisheng" sort="Luo, Zisheng" uniqKey="Luo Z" first="Zisheng" last="Luo">Zisheng Luo</name><name sortKey="Mao, Linchun" sort="Mao, Linchun" uniqKey="Mao L" first="Linchun" last="Mao">Linchun Mao</name><name sortKey="Mou, Wangshu" sort="Mou, Wangshu" uniqKey="Mou W" first="Wangshu" last="Mou">Wangshu Mou</name><name 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